h5pyのインストールがうまくいかない

環境は

macOS Monterey 12.0
チップ Apple M1 Pro

で仮想環境にpython3.8を入れて使っています。(素人なので必要な情報が書き切れているかわかりません、じゃんじゃん聞いてください)

jupyter notebook上で

python
1!pip install h5py

とインストールしようとすると

python
1Collecting h5py
2  Using cached h5py-3.6.0.tar.gz (384 kB)
3  Installing build dependencies ... done
4  Getting requirements to build wheel ... done
5  Preparing metadata (pyproject.toml) ... done
6Requirement already satisfied: numpy>=1.14.5 in ./-name-/lib/python3.8/site-packages (from h5py) (1.22.0)
7Building wheels for collected packages: h5py
8  Building wheel for h5py (pyproject.toml) ... error
9  error: subprocess-exited-with-error
10  
11  × Building wheel for h5py (pyproject.toml) did not run successfully.
12  │ exit code: 1
13  ╰─> [71 lines of output]
14      running bdist_wheel
15      running build
16      running build_py
17      creating build
18      creating build/lib.macosx-10.14-arm64-3.8
19      creating build/lib.macosx-10.14-arm64-3.8/h5py
20      copying h5py/h5py_warnings.py -> build/lib.macosx-10.14-arm64-3.8/h5py
21      copying h5py/version.py -> build/lib.macosx-10.14-arm64-3.8/h5py
22      copying h5py/__init__.py -> build/lib.macosx-10.14-arm64-3.8/h5py
23      copying h5py/ipy_completer.py -> build/lib.macosx-10.14-arm64-3.8/h5py
24      creating build/lib.macosx-10.14-arm64-3.8/h5py/_hl
25      copying h5py/_hl/files.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
26      copying h5py/_hl/compat.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
27      copying h5py/_hl/__init__.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
28      copying h5py/_hl/selections.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
29      copying h5py/_hl/dataset.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
30      copying h5py/_hl/vds.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
31      copying h5py/_hl/selections2.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
32      copying h5py/_hl/group.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
33      copying h5py/_hl/datatype.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
34      copying h5py/_hl/attrs.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
35      copying h5py/_hl/dims.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
36      copying h5py/_hl/base.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
37      copying h5py/_hl/filters.py -> build/lib.macosx-10.14-arm64-3.8/h5py/_hl
38      creating build/lib.macosx-10.14-arm64-3.8/h5py/tests
39      copying h5py/tests/test_dimension_scales.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
40      copying h5py/tests/test_attribute_create.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
41      copying h5py/tests/test_file_image.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
42      copying h5py/tests/conftest.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
43      copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
44      copying h5py/tests/test_h5f.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
45      copying h5py/tests/test_dataset_getitem.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
46      copying h5py/tests/test_group.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
47      copying h5py/tests/test_errors.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
48      copying h5py/tests/test_dataset_swmr.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
49      copying h5py/tests/test_slicing.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
50      copying h5py/tests/test_h5pl.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
51      copying h5py/tests/test_attrs.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
52      copying h5py/tests/__init__.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
53      copying h5py/tests/test_attrs_data.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
54      copying h5py/tests/test_h5t.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
55      copying h5py/tests/test_big_endian_file.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
56      copying h5py/tests/test_h5p.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
57      copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
58      copying h5py/tests/test_h5o.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
59      copying h5py/tests/test_datatype.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
60      copying h5py/tests/common.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
61      copying h5py/tests/test_dataset.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
62      copying h5py/tests/test_file.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
63      copying h5py/tests/test_selections.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
64      copying h5py/tests/test_dtype.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
65      copying h5py/tests/test_h5.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
66      copying h5py/tests/test_file2.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
67      copying h5py/tests/test_completions.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
68      copying h5py/tests/test_filters.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
69      copying h5py/tests/test_base.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
70      copying h5py/tests/test_objects.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests
71      creating build/lib.macosx-10.14-arm64-3.8/h5py/tests/data_files
72      copying h5py/tests/data_files/__init__.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/data_files
73      creating build/lib.macosx-10.14-arm64-3.8/h5py/tests/test_vds
74      copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/test_vds
75      copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/test_vds
76      copying h5py/tests/test_vds/__init__.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/test_vds
77      copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/test_vds
78      copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/data_files
79      copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/data_files
80      copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.macosx-10.14-arm64-3.8/h5py/tests/data_files
81      running build_ext
82      Loading library to get build settings and version: libhdf5.dylib
83      error: Unable to load dependency HDF5, make sure HDF5 is installed properly
84      error: dlopen(libhdf5.dylib, 0x0006): tried: 'libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file), '/private/var/folders/1q/nfss2b5j4jbf_68hk44rlm5c0000gn/T/pip-install-ay2x7p1p/h5py_e20133e0a59b44b693f20454891be17c/libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file)
85      [end of output]
86  
87  note: This error originates from a subprocess, and is likely not a problem with pip.
88  ERROR: Failed building wheel for h5py
89Failed to build h5py
90ERROR: Could not build wheels for h5py, which is required to install pyproject.toml-based projects
91

とエラーが吐かれてしまいます。すでに

python
1!brew install hdf5

としてhdf5は入っているのですが、うまく機能してくれていないようです。
丸投げで申し訳ないのですが、どうすれば改善できるのでしょうか...。

jbpb0

2022/03/18 07:07 編集

> error: pkg-config probably not installed: FileNotFoundError(2, 'No such file or directory') !brew install pkg-config で直るかも参考 https://qiita.com/ciela/items/32703d8dc6dd2297cc99 https://teratail.com/questions/210678

summersault

2022/03/18 08:38

実行してみたら、また違うエラーが出てきてしまいました。新たなエラーについてはネット上で全く同じものがいくつか質問で出ていますが、具体的な解答はどこでも得られませんでした...。改善が難しいんですかね？質問内容を編集します、ありがとうございます！

jbpb0

2022/03/18 22:45

> '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file), '/private/var/folders/1q/nfss2b5j4jbf_68hk44rlm5c0000gn/T/pip-install-ay2x7p1p/h5py_e20133e0a59b44b693f20454891be17c/libhdf5.dylib' (no such file), '/usr/local/lib/libhdf5.dylib' (no such file), '/usr/lib/libhdf5.dylib' (no such file) 上記を探したけど見つからない、とのこと > !brew install hdf5 としてhdf5は入っているそれでしたら、「libhdf5.dylib」というファイル名のファイルがどこかにインストールされてると思いますので、探してみてください https://teratail.com/questions/dqwx08mvbephn0 のtechnocoreさんの回答も参考になります (ファイル名は違いますが)