bundle installのエラーを解決したいです！！

環境

Ubuntu 18.04 LTS
rbenv 1.1.2-11-gc46a970
ruby 2.5.1p57 (2018-03-29 revision 63029) [x86_64-linux]
Bundler version 2.0.2
gem version 2.7.6

質問

bundle installをしたときにnokogiriの箇所でエラーが生じてしまいました。
どんな些細なことでもよいので、教えてくださるとうれしいです。

nokogiriについて

wsl
1$ gem install nokogiri -v '1.10.7'
2Building native extensions. This could take a while...
3/home/jack/.rbenv/versions/2.5.1/lib/ruby/2.5.0/rubygems/ext/builder.rb:76: warning: Insecure world writable dir /home/jack/.rbenv/versions/2.5.1 in PATH, mode 040777
4ERROR:  Error installing nokogiri:
5        ERROR: Failed to build gem native extension.
6
7    current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
8/home/jack/.rbenv/versions/2.5.1/bin/ruby -r ./siteconf20191219-27974-xgexs9.rb extconf.rb
9checking if the C compiler accepts ... yes
10Building nokogiri using packaged libraries.
11Using mini_portile version 2.4.0
12checking for gzdopen() in -lz... yes
13checking for iconv... yes
14************************************************************************
15IMPORTANT NOTICE:
16
17Building Nokogiri with a packaged version of libxml2-2.9.10
18with the following patches applied:
19        - 0001-Revert-Do-not-URI-escape-in-server-side-includes.patch
20        - 0002-Remove-script-macro-support.patch
21        - 0003-Update-entities-to-remove-handling-of-ssi.patch
22        - 0004-libxml2.la-is-in-top_builddir.patch
23
24Team Nokogiri will keep on doing their best to provide security
25updates in a timely manner, but if this is a concern for you and want
26to use the system library instead; abort this installation process and
27reinstall nokogiri as follows:
28
29    gem install nokogiri -- --use-system-libraries
30        [--with-xml2-config=/path/to/xml2-config]
31        [--with-xslt-config=/path/to/xslt-config]
32
33If you are using Bundler, tell it to use the option:
34
35    bundle config build.nokogiri --use-system-libraries
36    bundle install
37
38Note, however, that nokogiri is not fully compatible with arbitrary
39versions of libxml2 provided by OS/package vendors.
40************************************************************************
41Extracting libxml2-2.9.10.tar.gz into tmp/x86_64-pc-linux-gnu/ports/libxml2/2.9.10... OK
42Running git apply with /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/patches/libxml2/0001-Revert-Do-not-URI-escape-in-server-side-includes.patch... OK
43Running git apply with /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/patches/libxml2/0002-Remove-script-macro-support.patch... OK
44Running git apply with /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/patches/libxml2/0003-Update-entities-to-remove-handling-of-ssi.patch... OK
45Running git apply with /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/patches/libxml2/0004-libxml2.la-is-in-top_builddir.patch... OK
46Running 'configure' for libxml2 2.9.10... OK
47Running 'compile' for libxml2 2.9.10... OK
48Running 'install' for libxml2 2.9.10... OK
49Activating libxml2 2.9.10 (from /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ports/x86_64-pc-linux-gnu/libxml2/2.9.10)...
50************************************************************************
51IMPORTANT NOTICE:
52
53Building Nokogiri with a packaged version of libxslt-1.1.34.
54
55Team Nokogiri will keep on doing their best to provide security
56updates in a timely manner, but if this is a concern for you and want
57to use the system library instead; abort this installation process and
58reinstall nokogiri as follows:
59
60    gem install nokogiri -- --use-system-libraries
61        [--with-xml2-config=/path/to/xml2-config]
62        [--with-xslt-config=/path/to/xslt-config]
63
64If you are using Bundler, tell it to use the option:
65
66    bundle config build.nokogiri --use-system-libraries
67    bundle install
68************************************************************************
69Extracting libxslt-1.1.34.tar.gz into tmp/x86_64-pc-linux-gnu/ports/libxslt/1.1.34... OK
70Running 'configure' for libxslt 1.1.34... OK
71Running 'compile' for libxslt 1.1.34... OK
72Running 'install' for libxslt 1.1.34... OK
73Activating libxslt 1.1.34 (from /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ports/x86_64-pc-linux-gnu/libxslt/1.1.34)...
74checking for -llzma... no
75checking for xmlParseDoc() in libxml/parser.h... yes
76checking for xsltParseStylesheetDoc() in libxslt/xslt.h... yes
77checking for exsltFuncRegister() in libexslt/exslt.h... yes
78checking for xmlHasFeature()... yes
79checking for xmlFirstElementChild()... yes
80checking for xmlRelaxNGSetParserStructuredErrors()... yes
81checking for xmlRelaxNGSetParserStructuredErrors()... yes
82checking for xmlRelaxNGSetValidStructuredErrors()... yes
83checking for xmlSchemaSetValidStructuredErrors()... yes
84checking for xmlSchemaSetParserStructuredErrors()... yes
85creating Makefile
86
87current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
88make "DESTDIR=" clean
89
90current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
91make "DESTDIR="
92compiling html_document.c
93compiling html_element_description.c
94compiling html_entity_lookup.c
95compiling html_sax_parser_context.c
96compiling html_sax_push_parser.c
97compiling nokogiri.c
98compiling xml_attr.c
99compiling xml_attribute_decl.c
100compiling xml_cdata.c
101compiling xml_comment.c
102compiling xml_document.c
103compiling xml_document_fragment.c
104compiling xml_dtd.c
105compiling xml_element_content.c
106compiling xml_element_decl.c
107compiling xml_encoding_handler.c
108compiling xml_entity_decl.c
109compiling xml_entity_reference.c
110compiling xml_io.c
111compiling xml_libxml2_hacks.c
112compiling xml_namespace.c
113compiling xml_node.c
114xml_node.c: In function ‘reparent_node_with’:
115xml_node.c:304:15: warning: passing argument 1 of ‘xmlFree’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
116       xmlFree(reparentee->ns->prefix);
117               ^~~~~~~~~~
118xml_node.c:304:15: note: expected ‘void *’ but argument is of type ‘const xmlChar * {aka const unsigned char *}’
119xml_node.c: At top level:
120cc1: warning: unrecognized command line option ‘-Wno-self-assign’
121cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
122cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
123compiling xml_node_set.c
124compiling xml_processing_instruction.c
125compiling xml_reader.c
126compiling xml_relax_ng.c
127compiling xml_sax_parser.c
128compiling xml_sax_parser_context.c
129compiling xml_sax_push_parser.c
130compiling xml_schema.c
131compiling xml_syntax_error.c
132compiling xml_text.c
133compiling xml_xpath_context.c
134compiling xslt_stylesheet.c
135xslt_stylesheet.c:112:13: warning: ‘swallow_superfluous_xml_errors’ defined but not used [-Wunused-function]
136 static void swallow_superfluous_xml_errors(void * userdata, xmlErrorPtr error, ...)
137             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
138cc1: warning: unrecognized command line option ‘-Wno-self-assign’
139cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
140cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
141linking shared-object nokogiri/nokogiri.so
142Cleaning files only used during build.
143rm -rf /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri/tmp/x86_64-pc-linux-gnu/ports
144rm -rf /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ports
145
146current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
147make "DESTDIR=" install
148/usr/bin/install -c -m 0755 nokogiri.so ./.gem.20191219-27974-lm28kf/nokogiri
149
150Permission denied @ rb_file_s_rename - (./.gem.20191219-27974-lm28kf/nokogiri, /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/nokogiri)
151
152Gem files will remain installed in /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7 for inspection.
153Results logged to /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/gem_make.out

$ gem install nokogiri -v '1.10.7'のエラーについて、考えたこと

wsl
1/home/jack/.rbenv/versions/2.5.1/lib/ruby/2.5.0/rubygems/ext/builder.rb:76: warning: Insecure world writable dir /home/jack/.rbenv/versions/2.5.1 in PATH, mode 040777
2ERROR:  Error installing nokogiri:
3        ERROR: Failed to build gem native extension.

このエラーはこちらのサイトで述べられているように、あまり問題ではないと思います。

wsl
1If you are using Bundler, tell it to use the option:
2
3    bundle config build.nokogiri --use-system-libraries
4    bundle install
5
6Note, however, that nokogiri is not fully compatible with arbitrary
7versions of libxml2 provided by OS/package vendors.

$ bundle config build.nokogiri --use-system-libraries
この部分はしっかり記述できました。

$ cat ~/.bundle/config
BUNDLE_BUILD__NOKOGIRI: "--use-system-libraries"

libxml2が問題なのかなと思ったのですが、

wsl
1$ sudo apt install libxml2
2Reading package lists... Done
3Building dependency tree       
4Reading state information... Done
5libxml2 is already the newest version (2.9.4+dfsg1-6.1ubuntu1.2).
6libxml2 set to manually installed.
70 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

問題なさそうです。

どうぞよろしくお願いします。

行動規範の内容に同意します

回答5件

自己解決

パソコンを初期状態にし、アンインストールしもう一度やり直した結果、bundle installすることは可能になりました。
尚、原因に関しては究明できなかったので、もし何か解決方法を思いついた方がいらっしゃったら、よろしくお願いします。

投稿2019/12/31 08:54

jack_kanzaki

総合スコア106

Results logged to /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/gem_make.out
こちらを記載させていただきます。

wsl
1~/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7$ cat gem_make.out
2current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
3/home/jack/.rbenv/versions/2.5.1/bin/ruby -r ./siteconf20191219-9200-6226zd.rb extconf.rb --use-system-libraries
4checking if the C compiler accepts ... yes
5Building nokogiri using system libraries.
6checking for xmlParseDoc() in libxml/parser.h... yes
7checking for xsltParseStylesheetDoc() in libxslt/xslt.h... yes
8checking for exsltFuncRegister() in libexslt/exslt.h... yes
9checking for xmlHasFeature()... yes
10checking for xmlFirstElementChild()... yes
11checking for xmlRelaxNGSetParserStructuredErrors()... yes
12checking for xmlRelaxNGSetParserStructuredErrors()... yes
13checking for xmlRelaxNGSetValidStructuredErrors()... yes
14checking for xmlSchemaSetValidStructuredErrors()... yes
15checking for xmlSchemaSetParserStructuredErrors()... yes
16creating Makefile
17
18current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
19make "DESTDIR=" clean
20
21current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
22make "DESTDIR="
23compiling html_document.c
24compiling html_element_description.c
25compiling html_entity_lookup.c
26compiling html_sax_parser_context.c
27compiling html_sax_push_parser.c
28compiling nokogiri.c
29compiling xml_attr.c
30compiling xml_attribute_decl.c
31compiling xml_cdata.c
32compiling xml_comment.c
33compiling xml_document.c
34compiling xml_document_fragment.c
35compiling xml_dtd.c
36xml_dtd.c: In function ‘entities’:
37xml_dtd.c:47:47: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type [-Wincompatible-pointer-types]
38   xmlHashScan((xmlHashTablePtr)dtd->entities, element_copier, (void *)hash);
39                                               ^~~~~~~~~~~~~~
40In file included from /usr/include/libxml2/libxml/parser.h:18:0,
41                 from ./nokogiri.h:19,
42                 from ./xml_dtd.h:4,
43                 from xml_dtd.c:1:
44/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *, unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *, void *, const unsigned char *)}’
45    xmlHashScan (xmlHashTablePtr table,
46    ^~~~~~~~~~~
47xml_dtd.c: In function ‘notations’:
48xml_dtd.c:69:48: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type [-Wincompatible-pointer-types]
49   xmlHashScan((xmlHashTablePtr)dtd->notations, notation_copier, (void *)hash);
50                                                ^~~~~~~~~~~~~~~
51In file included from /usr/include/libxml2/libxml/parser.h:18:0,
52                 from ./nokogiri.h:19,
53                 from ./xml_dtd.h:4,
54                 from xml_dtd.c:1:
55/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *, unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *, void *, const unsigned char *)}’
56    xmlHashScan (xmlHashTablePtr table,
57    ^~~~~~~~~~~
58xml_dtd.c: In function ‘attributes’:
59xml_dtd.c:91:49: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type [-Wincompatible-pointer-types]
60   xmlHashScan((xmlHashTablePtr)dtd->attributes, element_copier, (void *)hash);
61                                                 ^~~~~~~~~~~~~~
62In file included from /usr/include/libxml2/libxml/parser.h:18:0,
63                 from ./nokogiri.h:19,
64                 from ./xml_dtd.h:4,
65                 from xml_dtd.c:1:
66/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *, unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *, void *, const unsigned char *)}’
67    xmlHashScan (xmlHashTablePtr table,
68    ^~~~~~~~~~~
69xml_dtd.c: In function ‘elements’:
70xml_dtd.c:113:47: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type [-Wincompatible-pointer-types]
71   xmlHashScan((xmlHashTablePtr)dtd->elements, element_copier, (void *)hash);
72                                               ^~~~~~~~~~~~~~
73In file included from /usr/include/libxml2/libxml/parser.h:18:0,
74                 from ./nokogiri.h:19,
75                 from ./xml_dtd.h:4,
76                 from xml_dtd.c:1:
77/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *, unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *, void *, const unsigned char *)}’
78    xmlHashScan (xmlHashTablePtr table,
79    ^~~~~~~~~~~
80xml_dtd.c: At top level:
81cc1: warning: unrecognized command line option ‘-Wno-self-assign’
82cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
83cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
84compiling xml_element_content.c
85compiling xml_element_decl.c
86compiling xml_encoding_handler.c
87compiling xml_entity_decl.c
88compiling xml_entity_reference.c
89compiling xml_io.c
90compiling xml_libxml2_hacks.c
91compiling xml_namespace.c
92compiling xml_node.c
93xml_node.c: In function ‘reparent_node_with’:
94xml_node.c:304:15: warning: passing argument 1 of ‘xmlFree’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
95       xmlFree(reparentee->ns->prefix);
96               ^~~~~~~~~~
97xml_node.c:304:15: note: expected ‘void *’ but argument is of type ‘const xmlChar * {aka const unsigned char *}’
98xml_node.c: At top level:
99cc1: warning: unrecognized command line option ‘-Wno-self-assign’
100cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
101cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
102compiling xml_node_set.c
103compiling xml_processing_instruction.c
104compiling xml_reader.c
105compiling xml_relax_ng.c
106compiling xml_sax_parser.c
107compiling xml_sax_parser_context.c
108compiling xml_sax_push_parser.c
109compiling xml_schema.c
110compiling xml_syntax_error.c
111compiling xml_text.c
112compiling xml_xpath_context.c
113compiling xslt_stylesheet.c
114xslt_stylesheet.c:112:13: warning: ‘swallow_superfluous_xml_errors’ defined but not used [-Wunused-function]
115 static void swallow_superfluous_xml_errors(void * userdata, xmlErrorPtr error, ...)
116             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
117cc1: warning: unrecognized command line option ‘-Wno-self-assign’
118cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
119cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
120linking shared-object nokogiri/nokogiri.so
121Cleaning files only used during build.
122rm -rf /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ports/archives
123
124current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
125make "DESTDIR=" install
126/usr/bin/install -c -m 0755 nokogiri.so ./.gem.20191219-9200-bmmfhb/nokogiri
127
128Permission denied @ rb_file_s_rename - (./.gem.20191219-9200-bmmfhb/nokogiri, /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/nokogiri)

投稿2019/12/19 10:18

jack_kanzaki

総合スコア106

この方法で同でしょうか？

https://qiita.com/pugiemonn/items/4b23a709ed194b02be6d

たしかnokogiriがバージョンアップしたことによる不具合だった記憶があります

投稿2019/12/19 03:12

story_aniki

総合スコア197

jack_kanzaki

2019/12/19 03:17

bundle configについてだと思われるのですが、おそらく違うことが原因かもしれません。出先なので、あとで実行させていただきます。ご指摘ありがとうごさいます。他にも、不具合箇所で改善すべきところがあれば、教えていただけると幸いです！

行動規範の内容に同意します

最後の３行ですが
まず
Permission denied @ rb_file_s_rename - (./.gem.20191219-27974-lm28kf/nokogiri, /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/nokogiri)
とあるのが気になります。jack でloginしてやってますよね？

Results logged to /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/gem_make.out

に多分有用な情報があります。それをひとまず参考にして試してください。

それとは別にモウ一点
bundle config build.nokogiri --use-system-libraries
bundle install
してみろ、というのがありますが、これは試しました？

投稿2019/12/19 02:44

winterboum

総合スコア23567

jack_kanzaki

2019/12/19 02:45

早速のお返事ありがとうございます。それとは別にモウ一点 bundle config build.nokogiri --use-system-libraries bundle install してみろ、というのがありますが、これは試しました？こちらは試しました。

jack_kanzaki

2019/12/19 02:57

まず Permission denied @ rb_file_s_rename - (./.gem.20191219-27974-lm28kf/nokogiri, /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/nokogiri) とあるのが気になります。jack でloginしてやってますよね？はい

jack_kanzaki

2019/12/19 02:58

Results logged to /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/gem_make.out に多分有用な情報があります。それをひとまず参考にして試してください。こちらを参考にしてみます。

winterboum

2019/12/19 10:27

gem_make.outをみると、nokogiriのcompileは終了し、 /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/nokogiri　に移すところで権限がない、というエラーとなっています。よもやとは思いますが /home/jack にcdして ls -l .rbenv ls -l .rbenv/versions ls -l .rbenv/versions/2.5.1 ls -l .rbenv/versions/2.5.1/lib ls -l .rbenv/versions/2.5.1/lib/ruby ls -l .rbenv/versions/2.5.1/lib/ruby/gems ls -l .rbenv/versions/2.5.1/lib/ruby/gems/2.5.0 ls -l .rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions ls -l .rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux ls -l .rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0 ls -l .rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7 の結果を見せてください

jack_kanzaki

2019/12/19 11:20

~/.rbenv/versions/2.5.1/lib/ruby/2.5.0$ ls -a . drb.rb kconv.rb pathname.rb ripper.rb time.rb .. e2mmap.rb logger.rb pp.rb rss timeout.rb English.rb erb.rb matrix prettyprint.rb rss.rb tmpdir.rb abbrev.rb expect.rb matrix.rb prime.rb rubygems tracer.rb base64.rb fiddle mkmf.rb profile.rb rubygems.rb tsort.rb benchmark.rb fiddle.rb monitor.rb profiler.rb scanf.rb un.rb bigdecimal fileutils.rb mutex_m.rb pstore.rb securerandom.rb unicode_normalize cgi find.rb net psych set.rb uri cgi.rb forwardable observer.rb psych.rb shell uri.rb cmath.rb forwardable.rb open-uri.rb racc shell.rb weakref.rb csv.rb getoptlong.rb open3.rb rdoc shellwords.rb webrick date.rb io openssl rdoc.rb singleton.rb webrick.rb debug.rb ipaddr.rb openssl.rb resolv-replace.rb socket.rb x86_64-linux delegate.rb irb optionparser.rb resolv.rb sync.rb yaml digest irb.rb optparse rexml syslog yaml.rb digest.rb json optparse.rb rinda tempfile.rb drb json.rb ostruct.rb ripper thwait.rb

jack_kanzaki

2019/12/19 11:54 編集

$ ls -l .rbenv/versions/2.5.1/lib/ruby/2.5.0 このコマンドを打った時にextentionsというディレクトが存在しないことに気づきました。 gemsというディレクトリを忘れていたので、下記で訂正させていただいております。

jack_kanzaki

2019/12/19 11:23

解決方法を自分でも考えてみます。ご回答、ありがとうございます。加えて、ご助言をしていただけると幸いです。

winterboum

2019/12/19 11:27

これらのdirは自動で作られるものではないかと思うのですが、とりあえずの逃げとして mkdir -p .rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0 を行ってからまたbundle install してみてください

jack_kanzaki

2019/12/19 11:51

すみません。誤りでした。

jack_kanzaki

2019/12/19 11:51

~/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0$ ls -l total 0 drwxr-xr-x 1 jack jack 4096 nokogiri-1.10.7

jack_kanzaki

2019/12/19 11:52

最後の2.5.0というディレクトリの権限が777だったので、 $ chmod 755 2.5.0としました。

winterboum

2019/12/19 13:56

で、どうなりました？

jack_kanzaki

2019/12/19 23:25

まだ、動かないままです。アンインストールして、リトライします。

行動規範の内容に同意します

字数オーバーのため、こちらにbundle installの結果を書かせていただきます。

wsl
1$ bundle install
2The dependency tzinfo-data (>= 0) will be unused by any of the platforms Bundler is installing for. Bundler is installing for ruby but the dependency is only for x86-mingw32, x86-mswin32, x64-mingw32, java. To add those platforms to the bundle, run `bundle lock --add-platform x86-mingw32 x86-mswin32 x64-mingw32 java`.
3Fetching gem metadata from https://rubygems.org/............
4Using rake 13.0.1
5Using concurrent-ruby 1.1.5
6Using i18n 1.7.0
7Using minitest 5.13.0
8Using thread_safe 0.3.6
9Using tzinfo 1.2.5
10Using activesupport 5.2.4
11Using builder 3.2.4
12Using erubi 1.9.0
13Using mini_portile2 2.4.0
14Fetching nokogiri 1.10.7
15Installing nokogiri 1.10.7 with native extensions
16Gem::Ext::BuildError: ERROR: Failed to build gem native extension.
17
18current directory:
19/home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
20/home/jack/.rbenv/versions/2.5.1/bin/ruby -r ./siteconf20191219-25381-1h6tf62.rb extconf.rb
21--use-system-libraries
22checking if the C compiler accepts ... yes
23Building nokogiri using system libraries.
24checking for xmlParseDoc() in libxml/parser.h... yes
25checking for xsltParseStylesheetDoc() in libxslt/xslt.h... yes
26checking for exsltFuncRegister() in libexslt/exslt.h... yes
27checking for xmlHasFeature()... yes
28checking for xmlFirstElementChild()... yes
29checking for xmlRelaxNGSetParserStructuredErrors()... yes
30checking for xmlRelaxNGSetParserStructuredErrors()... yes
31checking for xmlRelaxNGSetValidStructuredErrors()... yes
32checking for xmlSchemaSetValidStructuredErrors()... yes
33checking for xmlSchemaSetParserStructuredErrors()... yes
34creating Makefile
35
36current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
37make "DESTDIR=" clean
38
39current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
40make "DESTDIR="
41compiling html_document.c
42compiling html_element_description.c
43compiling html_entity_lookup.c
44compiling html_sax_parser_context.c
45compiling html_sax_push_parser.c
46compiling nokogiri.c
47compiling xml_attr.c
48compiling xml_attribute_decl.c
49compiling xml_cdata.c
50compiling xml_comment.c
51compiling xml_document.c
52compiling xml_document_fragment.c
53compiling xml_dtd.c
54xml_dtd.c: In function ‘entities’:
55xml_dtd.c:47:47: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type
56[-Wincompatible-pointer-types]
57   xmlHashScan((xmlHashTablePtr)dtd->entities, element_copier, (void *)hash);
58                                               ^~~~~~~~~~~~~~
59In file included from /usr/include/libxml2/libxml/parser.h:18:0,
60                 from ./nokogiri.h:19,
61                 from ./xml_dtd.h:4,
62                 from xml_dtd.c:1:
63/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *,
64unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *,
65void *, const unsigned char *)}’
66    xmlHashScan (xmlHashTablePtr table,
67    ^~~~~~~~~~~
68xml_dtd.c: In function ‘notations’:
69xml_dtd.c:69:48: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type
70[-Wincompatible-pointer-types]
71   xmlHashScan((xmlHashTablePtr)dtd->notations, notation_copier, (void *)hash);
72                                                ^~~~~~~~~~~~~~~
73In file included from /usr/include/libxml2/libxml/parser.h:18:0,
74                 from ./nokogiri.h:19,
75                 from ./xml_dtd.h:4,
76                 from xml_dtd.c:1:
77/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *,
78unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *,
79void *, const unsigned char *)}’
80    xmlHashScan (xmlHashTablePtr table,
81    ^~~~~~~~~~~
82xml_dtd.c: In function ‘attributes’:
83xml_dtd.c:91:49: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type
84[-Wincompatible-pointer-types]
85   xmlHashScan((xmlHashTablePtr)dtd->attributes, element_copier, (void *)hash);
86                                                 ^~~~~~~~~~~~~~
87In file included from /usr/include/libxml2/libxml/parser.h:18:0,
88                 from ./nokogiri.h:19,
89                 from ./xml_dtd.h:4,
90                 from xml_dtd.c:1:
91/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *,
92unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *,
93void *, const unsigned char *)}’
94    xmlHashScan (xmlHashTablePtr table,
95    ^~~~~~~~~~~
96xml_dtd.c: In function ‘elements’:
97xml_dtd.c:113:47: warning: passing argument 2 of ‘xmlHashScan’ from incompatible pointer type
98[-Wincompatible-pointer-types]
99   xmlHashScan((xmlHashTablePtr)dtd->elements, element_copier, (void *)hash);
100                                               ^~~~~~~~~~~~~~
101In file included from /usr/include/libxml2/libxml/parser.h:18:0,
102                 from ./nokogiri.h:19,
103                 from ./xml_dtd.h:4,
104                 from xml_dtd.c:1:
105/usr/include/libxml2/libxml/hash.h:209:4: note: expected ‘xmlHashScanner {aka void (*)(void *, void *,
106unsigned char *)}’ but argument is of type ‘void (*)(void *, void *, const xmlChar *) {aka void (*)(void *,
107void *, const unsigned char *)}’
108    xmlHashScan (xmlHashTablePtr table,
109    ^~~~~~~~~~~
110xml_dtd.c: At top level:
111cc1: warning: unrecognized command line option ‘-Wno-self-assign’
112cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
113cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
114compiling xml_element_content.c
115compiling xml_element_decl.c
116compiling xml_encoding_handler.c
117compiling xml_entity_decl.c
118compiling xml_entity_reference.c
119compiling xml_io.c
120compiling xml_libxml2_hacks.c
121compiling xml_namespace.c
122compiling xml_node.c
123xml_node.c: In function ‘reparent_node_with’:
124xml_node.c:304:15: warning: passing argument 1 of ‘xmlFree’ discards ‘const’ qualifier from pointer target
125type [-Wdiscarded-qualifiers]
126       xmlFree(reparentee->ns->prefix);
127               ^~~~~~~~~~
128xml_node.c:304:15: note: expected ‘void *’ but argument is of type ‘const xmlChar * {aka const unsigned
129char *}’
130xml_node.c: At top level:
131cc1: warning: unrecognized command line option ‘-Wno-self-assign’
132cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
133cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
134compiling xml_node_set.c
135compiling xml_processing_instruction.c
136compiling xml_reader.c
137compiling xml_relax_ng.c
138compiling xml_sax_parser.c
139compiling xml_sax_parser_context.c
140compiling xml_sax_push_parser.c
141compiling xml_schema.c
142compiling xml_syntax_error.c
143compiling xml_text.c
144compiling xml_xpath_context.c
145compiling xslt_stylesheet.c
146xslt_stylesheet.c:112:13: warning: ‘swallow_superfluous_xml_errors’ defined but not used
147[-Wunused-function]
148 static void swallow_superfluous_xml_errors(void * userdata, xmlErrorPtr error, ...)
149             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
150cc1: warning: unrecognized command line option ‘-Wno-self-assign’
151cc1: warning: unrecognized command line option ‘-Wno-constant-logical-operand’
152cc1: warning: unrecognized command line option ‘-Wno-parentheses-equality’
153linking shared-object nokogiri/nokogiri.so
154Cleaning files only used during build.
155rm -rf /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ports/archives
156
157current directory: /home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7/ext/nokogiri
158make "DESTDIR=" install
159/usr/bin/install -c -m 0755 nokogiri.so ./.gem.20191219-25381-1lh7zk3/nokogiri
160
161Permission denied @ rb_file_s_rename - (./.gem.20191219-25381-1lh7zk3/nokogiri,
162/home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/nokogiri)
163
164Gem files will remain installed in
165/home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/gems/nokogiri-1.10.7 for inspection.
166Results logged to
167/home/jack/.rbenv/versions/2.5.1/lib/ruby/gems/2.5.0/extensions/x86_64-linux/2.5.0/nokogiri-1.10.7/gem_make.out
168
169An error occurred while installing nokogiri (1.10.7), and Bundler cannot continue.
170Make sure that `gem install nokogiri -v '1.10.7' --source 'https://rubygems.org/'` succeeds before
171bundling.
172
173In Gemfile:
174  rails was resolved to 5.2.4, which depends on
175    actioncable was resolved to 5.2.4, which depends on
176      actionpack was resolved to 5.2.4, which depends on
177        actionview was resolved to 5.2.4, which depends on
178          rails-dom-testing was resolved to 2.0.3, which depends on
179            nokogiri