Q&A
ありがとうございます。リンク先の高評価が7個ついたコメントに従って、
/Library/Frameworks/R.framework/Resources/etc/Makeconf
の内部を
FLIBS = -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lm
から
FLIBS = -L/usr/local/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/usr/local/gfortran/lib -lgfortran -lm
に書き換えたところ、エラーメッセージが減って前進したようです。
しかしまだ、
ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0'
ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [edgeR.so] Error 1
ERROR: compilation failed for package ‘edgeR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/edgeR’
というエラーメッセージが残っており、
先ほどのリンク先のコメント内の以下に従えば解決するかもしれませんが、具体的にどうしたら良いかわかりません。自分でも色々試してみたいと思いますが、もしよければご助言いただけますと大変助かります。
I also made symbolic links for all library files located in
/usr/local/gfortran/lib
to
/usr/local/lib
but this step may not be necessary.
> sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Big Sur 11.4
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/lib/libRlapack.dylib
Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_3.34.0 limma_3.48.1
loaded via a namespace (and not attached):
[1] BiocManager_1.30.16 compiler_4.1.0 tools_4.1.0 Rcpp_1.0.6 grid_4.1.0
[6] locfit_1.5-9.4 lattice_0.20-44
