質問編集履歴
1
traceback 以降のスクリプト追加・scanpyについての説明追加
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@@ -18,23 +18,75 @@
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Python
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import scanpy
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>>> import scanpy
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import numpy as np
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>>> import numpy as np
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import pandas as pd
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>>> import pandas as pd
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import scanpy as sc
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>>> import scanpy as sc
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sc.settings.verbosity = 3 # verbosity: errors (0), warnings (1), info (2), hints (3)
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>>> sc.settings.verbosity = 3 # verbosity: errors (0), warnings (1), info (2), hints (3)
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sc.logging.print_versions()
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>>> sc.logging.print_versions()
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-----
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anndata 0.8.0
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scanpy 1.9.1
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-----
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PIL 9.4.0
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beta_ufunc NA
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binom_ufunc NA
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colorama 0.4.6
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cycler 0.10.0
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cython_runtime NA
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dateutil 2.8.2
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h5py 3.7.0
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joblib 1.2.0
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kiwisolver 1.4.4
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llvmlite 0.39.1
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matplotlib 3.5.3
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mpl_toolkits NA
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natsort 8.2.0
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nbinom_ufunc NA
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nt NA
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numba 0.56.4
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numpy 1.21.6
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packaging 23.0
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pandas 1.1.5
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pyparsing 3.0.9
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pytz 2022.7.1
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scipy 1.7.3
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session_info 1.0.0
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six 1.16.0
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sklearn 1.0.2
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threadpoolctl 3.1.0
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typing_extensions NA
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zipp NA
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-----
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Python 3.7.0 (v3.7.0:1bf9cc5093, Jun 27 2018, 04:59:51) [MSC v.1914 64 bit (AMD64)]
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Windows-10-10.0.19041-SP0
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-----
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Session information updated at 2023-01-30 15:34
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results_file = (r"
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>>> results_file = (r"C:\Users\XXXX")
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adata1 = sc.read_10x_mtx(
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>>> adata1 = sc.read_10x_mtx(
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... (r"F:\XXXXXX"),
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... var_names='gene_symbols',
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cache=True)
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... cache=True)
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... writing an h5ad cache file to speedup reading next time
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Traceback (most recent call last):
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File "<stdin>", line 4, in <module>
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File "C:\Users\XXXXX\AppData\Roaming\Python\Python37\site-packages\scanpy\readwrite.py", line 496, in read_10x_mtx
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prefix=prefix,
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File "C:\Users\XXXXX\AppData\Roaming\Python\Python37\site-packages\scanpy\readwrite.py", line 557, in _read_v3_10x_mtx
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cache_compression=cache_compression,
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File "C:\Users\XXXXX\AppData\Roaming\Python\Python37\site-packages\scanpy\readwrite.py", line 122, in read
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**kwargs,
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File "C:\Users\XXXXX\AppData\Roaming\Python\Python37\site-packages\scanpy\readwrite.py", line 775, in _read
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path_cache.parent.mkdir(parents=True)
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File "C:\Program Files\Python37\lib\pathlib.py", line 1230, in mkdir
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self._accessor.mkdir(self, mode)
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PermissionError: [WinError 5] アクセスが拒否されました。: 'cache'
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### 試したこと
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moduleのアンインストール＞再インストール
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pipアップグレード
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### 補足情報（FW/ツールのバージョンなど）
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scanpy (single-cell RNAの発現量データを解析するためのツール)
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https://scanpy.readthedocs.io/en/stable/
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ここにより詳細な情報を記載してください。
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