bundle installでエラーが出ます。

Question

前提・実現したいこと

bundle installをしてからrails sでサーバーを起動したいです。

あるリポジトリからローカルへgit cloneしてアプリを表示させたいのですがbundleした途端に以下のようなエラーが出ます。
エラー内容からgem install ovirt-engine-sdk -v '4.3.0'が成功する事を確認して下さいとあった為実行。その後
'libxml/xmlreader.h' file not foundとエラーが出ます。この解決方法がググってもわかりません汗

そもそもgemfileに記載していないはずのovirt-engine-sdk-4.3.0で何故エラーが出るのかもわかりません。

お忙しい中申し訳ありません。何か解決方法の助言を頂けないでしょうか、、

発生している問題・エラーメッセージ

$ bundle install

Your Gemfile lists the gem jquery-rails (>= 0) more than once.
You should probably keep only one of them.
Remove any duplicate entries and specify the gem only once (per group).
While it's not a problem now, it could cause errors if you change the version of one of them later.
Your Gemfile lists the gem dotenv-rails (>= 0) more than once.
You should probably keep only one of them.
Remove any duplicate entries and specify the gem only once (per group).
While it's not a problem now, it could cause errors if you change the version of one of them later.
The dependency tzinfo-data (>= 0) will be unused by any of the platforms Bundler is installing for. Bundler is installing for ruby but the dependency is only for x86-mingw32, x86-mswin32, x64-mingw32, java. To add those platforms to the bundle, run `bundle lock --add-platform x86-mingw32 x86-mswin32 x64-mingw32 java`.
Fetching gem metadata from https://rubygems.org/.......
Using rake 12.3.3
Using CFPropertyList 2.3.6
Using concurrent-ruby 1.1.5

...省力

Using json 2.3.0
Fetching ovirt-engine-sdk 4.3.0
Installing ovirt-engine-sdk 4.3.0 with native extensions
Errno::EPERM: Operation not permitted @ apply2files -
/Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/gems/2.6.0/gems/ovirt-engine-sdk-4.3.0/.yardopts
An error occurred while installing ovirt-engine-sdk (4.3.0), and Bundler cannot
continue.
Make sure that `gem install ovirt-engine-sdk -v '4.3.0' --source 'https://rubygems.org/'` succeeds
before bundling.

In Gemfile:
  fog was resolved to 2.0.0, which depends on
    fog-ovirt was resolved to 1.2.4, which depends on
      ovirt-engine-sdk

発生している問題・エラーメッセージ

＄ sudo gem install ovirt-engine-sdk -v '4.3.0' --source 'https://rubygems.org/'





Building native extensions. This could take a while...
ERROR:  Error installing ovirt-engine-sdk:
        ERROR: Failed to build gem native extension.

    current directory: /Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/gems/2.6.0/gems/ovirt-engine-sdk-4.3.0/ext/ovirtsdk4c
/Users/matsumotoshun/.rbenv/versions/2.6.5/bin/ruby -I /Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/2.6.0 -r ./siteconf20200620-52299-1tixirm.rb extconf.rb
checking for xml2-config... yes
checking for curl-config... yes
creating Makefile

current directory: /Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/gems/2.6.0/gems/ovirt-engine-sdk-4.3.0/ext/ovirtsdk4c
make "DESTDIR=" clean

current directory: /Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/gems/2.6.0/gems/ovirt-engine-sdk-4.3.0/ext/ovirtsdk4c
make "DESTDIR="
compiling ov_error.c
compiling ov_http_client.c
compiling ov_http_request.c
compiling ov_http_response.c
compiling ov_http_transfer.c
compiling ov_module.c
compiling ov_string.c
compiling ov_xml_reader.c
ov_xml_reader.c:24:10: fatal error: 'libxml/xmlreader.h' file not found
#include <libxml/xmlreader.h>
         ^~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [ov_xml_reader.o] Error 1

make failed, exit code 2

Gem files will remain installed in /Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/gems/2.6.0/gems/ovirt-engine-sdk-4.3.0 for inspection.
Results logged to /Users/matsumotoshun/.rbenv/versions/2.6.5/lib/ruby/gems/2.6.0/extensions/x86_64-darwin-18/2.6.0/ovirt-engine-sdk-4.3.0/gem_make.out

該当のソースコード

source 'https://rubygems.org'
git_source(:github) { |repo| "https://github.com/#{repo}.git" }

ruby '2.6.5'

gem 'rails', '~> 5.2.3'
gem 'mysql2'
gem 'puma', '~> 3.11'
gem 'sass-rails', '~> 5.0'
gem 'uglifier', '>= 1.3.0'
gem 'coffee-rails', '~> 4.2'
gem "jquery-rails"
gem 'turbolinks', '~> 5'
gem 'jbuilder', '~> 2.5'
gem 'bootsnap', '>= 1.1.0', require: false
gem 'mini_racer'
gem 'devise', '4.5.0'
gem 'devise-i18n'
gem 'devise-i18n-views'
gem 'dotenv-rails'
gem 'google-api-client', require: 'google/apis/calendar_v3'
gem 'redis-namespace'
gem 'sidekiq'
gem 'kaminari', '~> 0.17.0'
gem 'kaminari-bootstrap', '~> 3.0.1'
gem 'rails-i18n', '~> 5.1' # For 5.0.x, 5.1.x and 5.2.x
gem 'bootstrap', '~> 4.1.1'
gem 'jquery-rails'
gem 'active_decorator'

# 決済機能
gem 'payjp'

# full_calendar
gem 'momentjs-rails'
gem 'fullcalendar-rails'

# line_bot
gem 'line-bot-api'
# idデコード用
gem 'jwt'

# 検索機能
gem 'ransack'

# 環境変数設定用
gem 'dotenv-rails'

# cronの設定
gem 'whenever', require: false

# 論理削除
gem 'paranoia', '~> 2.3', '>= 2.3.1'

# ランダムな文字列を生成して、URLにする
gem 'public_uid'

# userデバイスを判定
gem 'browser'

# リンクを生成する
gem 'rinku'

# PWA対応
gem 'serviceworker-rails'
gem 'carrierwave'
gem 'fog'

# text_areaのフォームを自動調整
gem 'autosize', '~> 2.4'
gem 'thin'

# エラーをスラックに通知
gem 'slack_500'

group :development, :test do
  # Call 'byebug' anywhere in the code to stop execution and get a debugger console
  gem 'byebug', platforms: [:mri, :mingw, :x64_mingw]
  gem 'rspec-rails', '~> 3.6'
  gem 'spring-commands-rspec'
  gem "factory_bot_rails"
  gem 'rails-controller-testing'
end

group :development do
  gem 'web-console', '>= 3.3.0'
  gem 'listen', '>= 3.0.5', '< 3.2'
  gem 'spring'
  gem 'spring-watcher-listen', '~> 2.0.0'
  gem "rails-erd"
  gem 'bullet'
  gem 'rubocop', require: false
  gem 'brakeman', :require => false
end

group :test do
  gem 'capybara', '>= 2.15'
  gem 'selenium-webdriver'
  gem 'webdrivers', '~> 3.0'
  gem "rspec_junit_formatter"
end

# Windows does not include zoneinfo files, so bundle the tzinfo-data gem
gem 'tzinfo-data', platforms: [:mingw, :mswin, :x64_mingw, :jruby]

補足情報（FW/ツールのバージョンなど）

ここにより詳細な情報を記載してください。

Answer 1

gem 'fog'をgemfileから削除し、代わりにgem 'fog-aws'、　gem 'fog-local'を加える事で解決しました！
回答してくださったお二人の方、お忙しい中本当にありがとうございました！

Answer 2

gem 'fog'

fogは各種プラグイン的な奴を全部搭載しているのでインストールがとても大変です。

公式も

Dependency Notice
Currently all fog providers are getting separated into metagems to lower the load time and dependency count.

If there's a metagem available for your cloud provider, e.g. fog-aws, you should be using it instead of requiring the full fog collection to avoid unnecessary dependencies.

'fog' should be required explicitly only if the provider you use doesn't yet have a metagem available.

と書かれています。

必要なmetagemをfogのRUNTIME依存性リストから見つけてfogの代わりに使うとよいでしょう。
(多分fog-awsもしくはfog-localあたりで事足りるはず)

Answer 3

libxml/xmlreader.h　がないので失敗しています。
多くの場合（載せてあるlogの最後の行にある）gem_make.out　をみるとどうすればよいかの提案が書かれていますから、まずそれを見てください