Dockerでスクレイピング用のコンテナを作成したいが、ビルドでエラーになる

前提・実現したいこと

Dockerでスクレイピング用のコンテナを作成したいのですが、pipでインストール中に下記のようにエラーになってしまい、失敗します。
イメージはpython:alpine
形態素分析をするため、MeCabの辞書をWindowsのAnacondaに入れるといろいろ不備があったので、コンテナを作成しようと思いました。

発生している問題・エラーメッセージ

$ apk add --update --no-cache curl git bash file sudo openssh make gcc g++ curl ## 実行済
$ /usr/local/bin/python -m pip install --upgrade pip ## 実行済
$ pip install mecab-python3 numpy pandas sklearn beautifulsoup4 requests neologdn ## エラーになる

Collecting scipy>=0.17.0
  Downloading scipy-1.4.1.tar.gz (24.6 MB)
     |████████████████████████████████| 24.6 MB 14.3 MB/s
  Installing build dependencies ... \

done    
  Getting requirements to build wheel ... done
    Preparing wheel metadata ... error
    ERROR: Command errored out with exit status 1:
     command: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpiyo4xhry    
         cwd: /tmp/pip-install-o4bbympy/scipy
    Complete output (139 lines):
    lapack_opt_info:
    lapack_mkl_info:
    customize UnixCCompiler
      libraries mkl_rt not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
      NOT AVAILABLE

    openblas_lapack_info:
    customize UnixCCompiler
    customize UnixCCompiler
      libraries openblas not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']      NOT AVAILABLE

    openblas_clapack_info:
    customize UnixCCompiler
    customize UnixCCompiler
      libraries openblas,lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']
      NOT AVAILABLE

    flame_info:
    customize UnixCCompiler
      libraries flame not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']   
      NOT AVAILABLE
    
    atlas_3_10_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries tatlas,tatlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries tatlas,tatlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/
    customize UnixCCompiler
      libraries tatlas,tatlas not found in /usr/lib/
    <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
      NOT AVAILABLE

    atlas_3_10_info:
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries satlas,satlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries satlas,satlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/
    customize UnixCCompiler
      libraries satlas,satlas not found in /usr/lib/
    <class 'numpy.distutils.system_info.atlas_3_10_info'>
      NOT AVAILABLE

    atlas_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in /usr/lib/
    <class 'numpy.distutils.system_info.atlas_threads_info'>
      NOT AVAILABLE

    atlas_info:
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in /usr/local/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in /usr/lib
    customize UnixCCompiler
      libraries lapack_atlas not found in /usr/lib/
    customize UnixCCompiler
      libraries f77blas,cblas,atlas not found in /usr/lib/
    <class 'numpy.distutils.system_info.atlas_info'>
      NOT AVAILABLE

    accelerate_info:
      NOT AVAILABLE

    lapack_info:
    customize UnixCCompiler
      libraries lapack not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/']  
      NOT AVAILABLE

    lapack_src_info:
      NOT AVAILABLE

      NOT AVAILABLE

    setup.py:418: UserWarning: Unrecognized setuptools command ('dist_info --egg-base /tmp/pip-modern-metadata-xa6mg2ok'), proceeding with generating Cython sources and expanding templates
      warnings.warn("Unrecognized setuptools command ('{}'), proceeding with "   
    Running from scipy source directory.
    /tmp/pip-build-env-s92al3hm/overlay/lib/python3.8/site-packages/numpy/distutils/system_info.py:1712: UserWarning:
        Lapack (http://www.netlib.org/lapack/) libraries not found.
        Directories to search for the libraries can be specified in the
        numpy/distutils/site.cfg file (section [lapack]) or by setting
        the LAPACK environment variable.
      if getattr(self, '_calc_info_{}'.format(lapack))():
    /tmp/pip-build-env-s92al3hm/overlay/lib/python3.8/site-packages/numpy/distutils/system_info.py:1712: UserWarning:
        Lapack (http://www.netlib.org/lapack/) sources not found.
        Directories to search for the sources can be specified in the
        numpy/distutils/site.cfg file (section [lapack_src]) or by setting       
        the LAPACK_SRC environment variable.
      if getattr(self, '_calc_info_{}'.format(lapack))():
    Traceback (most recent call last):
      File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 257, in <module>
        main()
      File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 240, in main
        json_out['return_val'] = hook(**hook_input['kwargs'])
      File "/usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py", line 110, in prepare_metadata_for_build_wheel
        return hook(metadata_directory, config_settings)
      File "/tmp/pip-build-env-s92al3hm/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 156, in prepare_metadata_for_build_wheel
        self.run_setup()
      File "/tmp/pip-build-env-s92al3hm/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 242, in run_setup
        super(_BuildMetaLegacyBackend,
      File "/tmp/pip-build-env-s92al3hm/overlay/lib/python3.8/site-packages/setuptools/build_meta.py", line 142, in run_setup
        exec(compile(code, __file__, 'exec'), locals())
      File "setup.py", line 540, in <module>
        setup_package()
      File "setup.py", line 536, in setup_package
        setup(**metadata)
      File "/tmp/pip-build-env-s92al3hm/overlay/lib/python3.8/site-packages/numpy/distutils/core.py", line 137, in setup
        config = configuration()
      File "setup.py", line 435, in configuration
        raise NotFoundError(msg)
    numpy.distutils.system_info.NotFoundError: No lapack/blas resources found.   
    ----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpiyo4xhry Check the logs for full command output.

行動規範の内容に同意します

回答1件

ベストアンサー

このへんのパッケージを追加でインストールすればうまくビルドできるように思います。

apk --no-cache --update-cache add gcc gfortran python python-dev py-pip build-base wget freetype-dev libpng-dev openblas-dev

link: https://gist.github.com/orenitamar/f29fb15db3b0d13178c1c4dd611adce2

投稿2020/01/28 16:45

yuokada

総合スコア550

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Dockerでスクレイピング用のコンテナを作成したいが、ビルドでエラーになる

前提・実現したいこと

発生している問題・エラーメッセージ

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