質問編集履歴
1
-f → -f bam
test
CHANGED
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File without changes
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test
CHANGED
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@@ -6,7 +6,7 @@
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-
cmd_htseq = r"htseq-count -f C:\test\test.bam C:\test\test.gtf > C:\test\count_data.txt"
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+
cmd_htseq = r"htseq-count -f bam C:\test\test.bam C:\test\test.gtf > C:\test\count_data.txt"
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subprocess.run(cmd_htseq.split())
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@@ -16,13 +16,15 @@
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---------------------------------------------------------------------------
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+
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+
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FileNotFoundError Traceback (most recent call last)
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in
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2
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-
3 cmd_htseq = r"htseq-count -f C:\test\test.bam C:\test\test.gtf > C:\test\count_data.txt"
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+
3 cmd_htseq = r"htseq-count -f bam C:\test\test.bam C:\test\test.gtf > C:\test\count_data.txt"
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----> 4 subprocess.run(cmd_htseq.split())
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