質問編集履歴
1
file.bamをFASTAに変換したものをアップロードしました。
test
CHANGED
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File without changes
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test
CHANGED
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@@ -202,65 +202,7 @@
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202
202
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203
203
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GAATGAGT
|
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204
204
|
|
|
205
|
-
|
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205
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+
|
|
206
|
-
|
|
207
|
-
AGAGATCT
|
|
208
|
-
|
|
209
|
-
GAGTCCTG
|
|
210
|
-
|
|
211
|
-
CACACTGA
|
|
212
|
-
|
|
213
|
-
GTTACAGG
|
|
214
|
-
|
|
215
|
-
GGACCTTT
|
|
216
|
-
|
|
217
|
-
TAGACTAT
|
|
218
|
-
|
|
219
|
-
ACTGTTTG
|
|
220
|
-
|
|
221
|
-
AAGTGGCT
|
|
222
|
-
|
|
223
|
-
TGCTCTCA
|
|
224
|
-
|
|
225
|
-
CGGCGTGG
|
|
226
|
-
|
|
227
|
-
GTGCATGA
|
|
228
|
-
|
|
229
|
-
GTCATTAG
|
|
230
|
-
|
|
231
|
-
AGCTCCTT
|
|
232
|
-
|
|
233
|
-
TCACCCGA
|
|
234
|
-
|
|
235
|
-
GTTGCCAC
|
|
236
|
-
|
|
237
|
-
CTAATGCG
|
|
238
|
-
|
|
239
|
-
AACGAGGT
|
|
240
|
-
|
|
241
|
-
AGCCACCA
|
|
242
|
-
|
|
243
|
-
TAGTGAAC
|
|
244
|
-
|
|
245
|
-
CCAGTCCA
|
|
246
|
-
|
|
247
|
-
ACCTCAGC
|
|
248
|
-
|
|
249
|
-
GGTGGACT
|
|
250
|
-
|
|
251
|
-
CCGGCGTC
|
|
252
|
-
|
|
253
|
-
TAACTCCG
|
|
254
|
-
|
|
255
|
-
ACACCGTG
|
|
256
|
-
|
|
257
|
-
GTAGAACG
|
|
258
|
-
|
|
259
|
-
GGATTGAC
|
|
260
|
-
|
|
261
|
-
ACGTATCC
|
|
262
|
-
|
|
263
|
-
TTCGGAAA
|
|
264
206
|
|
|
265
207
|
…
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|
266
208
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@@ -273,3 +215,217 @@
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273
215
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エラーの原因、修正箇所を教えて頂けないでしょうか。
|
|
274
216
|
|
|
275
217
|
お願いします。
|
|
218
|
+
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|
219
|
+
＜追記＞
|
|
220
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+
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|
221
|
+
file.bamは以下のような形です。
|
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222
|
+
|
|
223
|
+
BAMファイルの読み方が分からず、
|
|
224
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+
|
|
225
|
+
samtools fasta file.bam > file.fa
|
|
226
|
+
|
|
227
|
+
で変換したものが以下です。
|
|
228
|
+
|
|
229
|
+
```ここに言語を入力
|
|
230
|
+
|
|
231
|
+
>M01400:201:000000000-B57RM:1:1113:26374:10799
|
|
232
|
+
|
|
233
|
+
TAGTCCCAGCTGCTCAGGAGGCTGAAGCAGGAGAATTACTTGAACTGAAGCGGAGGTTGCAGTGAGCTGAGATCACGCCACTGCACCTCCAGCCTGGGTAACAAAGAGAGACA
|
|
234
|
+
|
|
235
|
+
>M01400:201:000000000-B57RM:1:1119:26033:11432
|
|
236
|
+
|
|
237
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAGGTATTCA
|
|
238
|
+
|
|
239
|
+
>M01400:201:000000000-B57RM:1:1107:18890:12462
|
|
240
|
+
|
|
241
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGTTTTCAA
|
|
242
|
+
|
|
243
|
+
>M01400:201:000000000-B57RM:1:2108:16617:8847
|
|
244
|
+
|
|
245
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGCGTA
|
|
246
|
+
|
|
247
|
+
>M01400:201:000000000-B57RM:1:2102:14973:23007
|
|
248
|
+
|
|
249
|
+
GCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGT
|
|
250
|
+
|
|
251
|
+
>M01400:201:000000000-B57RM:1:1119:11253:10536
|
|
252
|
+
|
|
253
|
+
CTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAGAGGT
|
|
254
|
+
|
|
255
|
+
...
|
|
256
|
+
|
|
257
|
+
>M01400:201:000000000-B57RM:1:2110:20940:24899
|
|
258
|
+
|
|
259
|
+
CTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCA
|
|
260
|
+
|
|
261
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTT
|
|
262
|
+
|
|
263
|
+
>M01400:201:000000000-B57RM:1:1101:5379:9468
|
|
264
|
+
|
|
265
|
+
>M01400:201:000000000-B57RM:1:1112:19959:11614
|
|
266
|
+
|
|
267
|
+
>M01400:201:000000000-B57RM:1:1111:17929:2377
|
|
268
|
+
|
|
269
|
+
>M01400:201:000000000-B57RM:1:2114:10378:19188
|
|
270
|
+
|
|
271
|
+
>M01400:201:000000000-B57RM:1:2107:3172:12498
|
|
272
|
+
|
|
273
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTGCCC
|
|
274
|
+
|
|
275
|
+
>M01400:201:000000000-B57RM:1:1109:7422:9436
|
|
276
|
+
|
|
277
|
+
>M01400:201:000000000-B57RM:1:1112:25404:3648
|
|
278
|
+
|
|
279
|
+
>M01400:201:000000000-B57RM:1:1114:10367:23476
|
|
280
|
+
|
|
281
|
+
CCCTCCCAAAGTTAACTAATCCTCAGAGACTGCAAACAACCTACCTGTGAGCATGCCTTTGATATGCAA
|
|
282
|
+
|
|
283
|
+
>M01400:201:000000000-B57RM:1:2105:21791:8292
|
|
284
|
+
|
|
285
|
+
CTTCCGATCTCACTTATCTTGACTATAGGAGAGATAAGTG
|
|
286
|
+
|
|
287
|
+
>M01400:201:000000000-B57RM:1:2111:6584:14960
|
|
288
|
+
|
|
289
|
+
>M01400:201:000000000-B57RM:1:1116:11971:15695
|
|
290
|
+
|
|
291
|
+
>M01400:201:000000000-B57RM:1:2107:14103:2153
|
|
292
|
+
|
|
293
|
+
>M01400:201:000000000-B57RM:1:2112:6123:8257
|
|
294
|
+
|
|
295
|
+
>M01400:201:000000000-B57RM:1:1112:16612:2657
|
|
296
|
+
|
|
297
|
+
AGTCATCATCTAATGGAATTGCATGGAATCATCATCAAATGGAATCGAATGGAATCAACATCAAATGGAATCAAATGGAATCATTGAACGGA
|
|
298
|
+
|
|
299
|
+
>M01400:201:000000000-B57RM:1:2116:3980:8645
|
|
300
|
+
|
|
301
|
+
>M01400:201:000000000-B57RM:1:1108:15797:6718
|
|
302
|
+
|
|
303
|
+
ATGGTGCCCTCTTGCTTCTAAAAAGCAAGACTGCTTTGTAATGGCTGCTCT
|
|
304
|
+
|
|
305
|
+
>M01400:201:000000000-B57RM:1:1116:7506:23225
|
|
306
|
+
|
|
307
|
+
>M01400:201:000000000-B57RM:1:2113:16155:14842
|
|
308
|
+
|
|
309
|
+
TGTTCAACTCCCACTTATGAGTGAGAACATGGGGTATTTGGTTTTCTCTTCCTGTGTT
|
|
310
|
+
|
|
311
|
+
>M01400:201:000000000-B57RM:1:1104:23739:8369
|
|
312
|
+
|
|
313
|
+
GAATTCACTCGGAATAGGAAATCTCAGCCTGATTCTCCCCCAGCATCTCCCTCCCCTATAGAGCAATGCCTGT
|
|
314
|
+
|
|
315
|
+
>M01400:201:000000000-B57RM:1:2108:13627:25167
|
|
316
|
+
|
|
317
|
+
CTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCC
|
|
318
|
+
|
|
319
|
+
>M01400:201:000000000-B57RM:1:1117:20846:18468
|
|
320
|
+
|
|
321
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAA
|
|
322
|
+
|
|
323
|
+
>M01400:201:000000000-B57RM:1:1119:28174:17064
|
|
324
|
+
|
|
325
|
+
>M01400:201:000000000-B57RM:1:2105:23616:19481
|
|
326
|
+
|
|
327
|
+
AGTGGCCTGGGTCCCATTCTTTCTGAAGTCTCTCCCTCTCCAGCTCTGGACTGCATCGTCGCCCACAGAGGGGATGCTTCTTATCCGGTGG
|
|
328
|
+
|
|
329
|
+
>M01400:201:000000000-B57RM:1:1102:3493:9712
|
|
330
|
+
|
|
331
|
+
ATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAAGTCAGGAGTTTGAGACCAGCTTGACCAACATAGTGA
|
|
332
|
+
|
|
333
|
+
>M01400:201:000000000-B57RM:1:2116:22487:4781
|
|
334
|
+
|
|
335
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGTAAGATCGGAAAA
|
|
336
|
+
|
|
337
|
+
>M01400:201:000000000-B57RM:1:1118:21295:23935
|
|
338
|
+
|
|
339
|
+
AGTCCATGGGTTATTCCATTCCATTCAATTAGATAATTCCATTC
|
|
340
|
+
|
|
341
|
+
>M01400:201:000000000-B57RM:1:1110:20805:19431
|
|
342
|
+
|
|
343
|
+
>M01400:201:000000000-B57RM:1:1116:25365:19844
|
|
344
|
+
|
|
345
|
+
>M01400:201:000000000-B57RM:1:2105:17405:22459
|
|
346
|
+
|
|
347
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAGCGG
|
|
348
|
+
|
|
349
|
+
>M01400:201:000000000-B57RM:1:2110:24292:21276
|
|
350
|
+
|
|
351
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAG
|
|
352
|
+
|
|
353
|
+
>M01400:201:000000000-B57RM:1:1115:11693:3270
|
|
354
|
+
|
|
355
|
+
>M01400:201:000000000-B57RM:1:2104:19336:14696
|
|
356
|
+
|
|
357
|
+
CTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
|
|
358
|
+
|
|
359
|
+
>M01400:201:000000000-B57RM:1:2102:27456:10532
|
|
360
|
+
|
|
361
|
+
ACTAGCCGGGCTTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCA
|
|
362
|
+
|
|
363
|
+
>M01400:201:000000000-B57RM:1:2114:7890:12218
|
|
364
|
+
|
|
365
|
+
>M01400:201:000000000-B57RM:1:1102:12104:24151
|
|
366
|
+
|
|
367
|
+
>M01400:201:000000000-B57RM:1:2111:18205:18888
|
|
368
|
+
|
|
369
|
+
>M01400:201:000000000-B57RM:1:2107:4141:15987
|
|
370
|
+
|
|
371
|
+
>M01400:201:000000000-B57RM:1:1119:13339:17827
|
|
372
|
+
|
|
373
|
+
>M01400:201:000000000-B57RM:1:1109:20097:6551
|
|
374
|
+
|
|
375
|
+
TCTATTTTAATGCATGGCTTCGGATGTTAAGAATACTTAATGAAAATGTCAAAACTTGGCAATTTTCAGCAGAAACTCA
|
|
376
|
+
|
|
377
|
+
>M01400:201:000000000-B57RM:1:2119:24934:23194
|
|
378
|
+
|
|
379
|
+
>M01400:201:000000000-B57RM:1:2101:13434:14822
|
|
380
|
+
|
|
381
|
+
>M01400:201:000000000-B57RM:1:1112:27249:14630
|
|
382
|
+
|
|
383
|
+
CTGCTCTGGAGGCTGCTGCAGTTGTCTGGGTGAGAGACGGTGGTGGCTTGGACCA
|
|
384
|
+
|
|
385
|
+
>M01400:201:000000000-B57RM:1:2102:28197:13960
|
|
386
|
+
|
|
387
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGA
|
|
388
|
+
|
|
389
|
+
>M01400:201:000000000-B57RM:1:2105:29041:15461
|
|
390
|
+
|
|
391
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGA
|
|
392
|
+
|
|
393
|
+
>M01400:201:000000000-B57RM:1:2119:21220:15826
|
|
394
|
+
|
|
395
|
+
ATCTAAAGCGGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGA
|
|
396
|
+
|
|
397
|
+
...
|
|
398
|
+
|
|
399
|
+
>M01400:201:000000000-B57RM:1:2112:8709:10847
|
|
400
|
+
|
|
401
|
+
>M01400:201:000000000-B57RM:1:2109:15574:3676
|
|
402
|
+
|
|
403
|
+
>M01400:201:000000000-B57RM:1:2113:23952:23774
|
|
404
|
+
|
|
405
|
+
>M01400:201:000000000-B57RM:1:2118:18170:22640
|
|
406
|
+
|
|
407
|
+
>M01400:201:000000000-B57RM:1:2108:20065:19990
|
|
408
|
+
|
|
409
|
+
AGAAAGAAACATAAAGTAGATGGTGGTTGCCAGGGTTTGGATGGAAGGGGGCATAGGAGTGACTACTAACA
|
|
410
|
+
|
|
411
|
+
>M01400:201:000000000-B57RM:1:1101:10277:16222
|
|
412
|
+
|
|
413
|
+
ATTTCGCTCGCTCAGCGGGAAGACCTTGGTCAGCGTGAGGGTCTGTGT
|
|
414
|
+
|
|
415
|
+
>M01400:201:000000000-B57RM:1:1101:10348:17597
|
|
416
|
+
|
|
417
|
+
ATTTCGCTCGCTCAGCGGGAAGACCTTGGTCAGCGTGAGGGTCTGTGT
|
|
418
|
+
|
|
419
|
+
>M01400:201:000000000-B57RM:1:1101:10673:12347
|
|
420
|
+
|
|
421
|
+
ATTTCGCTCGCTCAGCGGGAAGACCTTGGTCAGCGTGAGGGTCTGTGT
|
|
422
|
+
|
|
423
|
+
>M01400:201:000000000-B57RM:1:1101:10824:16029
|
|
424
|
+
|
|
425
|
+
ATTTCGCTCGCTCAGCGGGAAGACCTTGGTCAGCGTGAGGGTCTGTG
|
|
426
|
+
|
|
427
|
+
|
|
428
|
+
|
|
429
|
+
...
|
|
430
|
+
|
|
431
|
+
```
|