質問編集履歴
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コードの修正
test
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test
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@@ -68,89 +68,73 @@
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```python
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A = ""
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max_len = [0]
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min_len = [10000000000000000000000]
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max_number = [0]
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min_number = [0]
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with open("short.sequ.txt") as f:
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for line in f:
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strip_line = line.rstrip()
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m
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len_number = len(strip_line)
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if strip_line.startswith(">"):
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print(strip_line+"\n")
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def change(protein, seq):
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global max_len,max_protein,min_len,min_protein
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seq_len = len(seq)
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A = ""
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return
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else:
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A += strip_line
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if len_number == 0:
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print(
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print(len(A))
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A = ""
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if
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if [len(A)] > max_len:
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max_
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max_number.append(len(A))
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if [len(A)] < min_len:
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min_number.append(len(A))
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min_len,min_protein = seq_len,protein
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print(max(max_number))
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new_number = [i for i in min_number if i > 0]
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print(min(new_number))
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for line in f:
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strip_line = line.rstrip()
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if strip_line.startswith(">"):
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a_line = strip_line
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change(a_line, a_seq)
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a_seq = ""
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print(strip_line+'\n')
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else:
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A = [len(a_seq+strip_line)]
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a_seq += strip_line
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msg1 = "最大アミノ酸エントリ："
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msg2 = "長さ："
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msg3 = "最小アミノ酸エントリ："
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print(msg1,max_protein,msg2,max_len)
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print(msg3,min_protein,msg2,min_len)
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@@ -158,58 +142,4 @@
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```
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１、毎回def changeを使用するので最初に関数を持ってきたいのですがデータを読み込むコードとエラーが生じてしまう
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２、global関数を使用せずに最大値、最小値を更新する方法が知りたい
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最大値と最小値が見つかった時に、前行と対応させてリストに格納するにはどうしたらいいでしょうか？
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以前も質問させていただきましたが、自分の中で解決できないので今一度アドバイスをいただきたいです。
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宜しくお願い致します。
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理想の出力は
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```python
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>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-12 substr. MG1655]
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[100]
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>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-12 substr. MG1655]
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[200]
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>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-12 substr. MG1655]
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[300]
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最大アミノ酸：>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-12 substr. MG1655]
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最大値：３００
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最小アミノ酸：>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-12 substr. MG1655]
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最小値：１００
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```
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といった感じです。
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