RでのBioconductorーBioManagerを利用しようとして以下のメッセージが出て、困っています。
特に、「'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details」の箇所がわからず、Google検索もしてみましたが見つけきれず、対処方法を教えていただけないでしょうか?R version 4.2.0 (2022-04-22)、macM1-macOS Monterey(12.4)になります。よろしくお願い致します。
R
1if (!require("BiocManager", quietly = TRUE)) 2install.packages("BiocManager") 3BiocManager::install("impute") 4 5'getOption("repos")' replaces Bioconductor standard repositories, see 6'?repositories' for details 7 8replacement repositories: 9 CRAN: http://cran.ism.ac.jp 10 11Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.0 (2022-04-22) 12Installing package(s) 'impute' 13Warning: unable to access index for repository https://bioconductor.org/packages/3.15/bioc/bin/macosx/big-sur-arm64/contrib/4.2: 14 cannot open URL 'https://bioconductor.org/packages/3.15/bioc/bin/macosx/big-sur-arm64/contrib/4.2/PACKAGES' 15Warning: unable to access index for repository https://bioconductor.org/packages/3.15/data/annotation/bin/macosx/big-sur-arm64/contrib/4.2: 16 cannot open URL 'https://bioconductor.org/packages/3.15/data/annotation/bin/macosx/big-sur-arm64/contrib/4.2/PACKAGES' 17Warning: unable to access index for repository https://bioconductor.org/packages/3.15/data/experiment/bin/macosx/big-sur-arm64/contrib/4.2: 18 cannot open URL 'https://bioconductor.org/packages/3.15/data/experiment/bin/macosx/big-sur-arm64/contrib/4.2/PACKAGES' 19Warning: unable to access index for repository https://bioconductor.org/packages/3.15/workflows/bin/macosx/big-sur-arm64/contrib/4.2: 20 cannot open URL 'https://bioconductor.org/packages/3.15/workflows/bin/macosx/big-sur-arm64/contrib/4.2/PACKAGES' 21Warning: unable to access index for repository https://bioconductor.org/packages/3.15/books/bin/macosx/big-sur-arm64/contrib/4.2: 22 cannot open URL 'https://bioconductor.org/packages/3.15/books/bin/macosx/big-sur-arm64/contrib/4.2/PACKAGES' 23Package which is only available in source form, and may need 24 compilation of C/C++/Fortran: ‘impute’ 25Do you want to attempt to install these from sources? (Yes/no/cancel) y 26installing the source package ‘impute’ 27 28trying URL 'https://bioconductor.org/packages/3.15/bioc/src/contrib/impute_1.70.0.tar.gz' 29Content type 'application/x-gzip' length 641570 bytes (626 KB) 30================================================== 31downloaded 626 KB 32 33/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c knnimpute.f -o knnimpute.o 34 35The downloaded source packages are in 36 ‘/private/var/folders/1s/4hr3h8r93z3b8l3t1p969_3c0000gp/T/RtmpT9R5tC/downloaded_packages’ 37Warning message: 38In install.packages(...) : 39 installation of package ‘impute’ had non-zero exit status
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