回答編集履歴
2
投稿者様の結果？に近くなるように直しました
test
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@@ -12,8 +12,6 @@
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seq = ""
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-
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-
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for line in f.readlines():
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if line.startswith(">"):
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@@ -26,20 +24,48 @@
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count.append(len(seq))
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print(len(seq)
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print(len(seq))
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+
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-
>実行結果
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>> 実行結果
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>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-1
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36
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37
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2 substr. MG1655]
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0
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0
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40
40
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-
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70
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42
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140
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210
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280
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350
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420
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490
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505
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505
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505
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61
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>YP_009518833.1 uncharacterized protein YtiA [Escherichia coli str. K-12 substr.
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62
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+
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43
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-
5
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63
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MG1655]
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64
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505
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66
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575
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68
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69
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590
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44
70
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45
71
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```
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1
仕様がよくわからないのであれですが、とりあえず質問者さんの動かしたいと思われるコードに直しました
test
CHANGED
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@@ -1,87 +1,45 @@
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1
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-
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1
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あまり良くわかっていませんが...
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こういう動作であっていますか？
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```python
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8
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-
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9
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with open("short.sequ.txt", 'rt', encoding='utf-8') as f:
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count = []
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seq = ""
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for line in f.readlines():
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.
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if line.startswith(">"):
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print(line, end='')
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else:
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seq += "".join(line.split())
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count.append(len(seq))
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[1, 2, 3, 4, 5]
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[1, 2, 3, 4, 5, 6]
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[1, 2, 3, 4, 5, 6, 7]
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[1, 2, 3, 4, 5, 6, 7, 8]
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print(len(seq), end='')
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-
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>実行結果
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44
34
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35
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>YP_009518834.1 putative uncharacterized protein YjiT [Escherichia coli str. K-1
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45
36
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37
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+
2 substr. MG1655]
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46
38
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47
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-
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+
070140210280350420490505505505>YP_009518833.1 uncharacterized protein YtiA [Esch
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48
40
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41
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+
erichia coli str. K-12 substr. MG1655]
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49
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50
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-
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51
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-
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43
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+
505575590
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-
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>>> count = []
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>>> f = (1,2,3,4,5,6,7,8,9)
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>>> for line in f:
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... count = 0
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... count += line
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... count
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...
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1
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2
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70
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3
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-
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75
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-
5
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76
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-
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7
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80
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82
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9
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84
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85
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>>>
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86
44
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87
45
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```
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