エラーの原因が分かりません。

###前提・実現したいこと
ここに質問したいことを詳細に書いてください
ruby
sudo /apache/bin/apachectl start
vagrantに入ってapacheを起動して特定のページを表示する手順です。
vagrantに入ってapacheを起動した時にエラーメッセージが発生しました。

###発生している問題・エラーメッセージ

Details:
It looks like Bundler could not find a gem. Maybe you didn't install all the gems that this application needs. To install your gems, please run:

bundle install
If that didn't work, then the problem is probably caused by your application being run under a different environment than it's supposed to. Please check the following:

Is this app supposed to be run as the koko user?
Is this app being run on the correct Ruby interpreter? Below you will see which Ruby interpreter Phusion Passenger attempted to use.
-------- The exception is as follows: -------

Could not find rake-12.0.0 in any of the sources (Bundler::GemNotFound)
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/spec_set.rb:87:in block in materialize' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/spec_set.rb:80:in map!'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/spec_set.rb:80:in materialize' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/definition.rb:176:in specs'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/definition.rb:235:in specs_for' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/definition.rb:224:in requested_specs'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/runtime.rb:118:in block in definition_method' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/runtime.rb:19:in setup'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler.rb💯in setup' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/bundler-1.14.3/lib/bundler/setup.rb:20:in <top (required)>'
/usr/local/rbenv/versions/2.3.3/lib/ruby/site_ruby/2.3.0/rubygems/core_ext/kernel_require.rb:55:in require' /usr/local/rbenv/versions/2.3.3/lib/ruby/site_ruby/2.3.0/rubygems/core_ext/kernel_require.rb:55:in require'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/ruby_supportlib/phusion_passenger/loader_shared_helpers.rb:430:in activate_gem' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/ruby_supportlib/phusion_passenger/loader_shared_helpers.rb:297:in block in run_load_path_setup_code'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/ruby_supportlib/phusion_passenger/loader_shared_helpers.rb:435:in running_bundler' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/ruby_supportlib/phusion_passenger/loader_shared_helpers.rb:296:in run_load_path_setup_code'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/helper-scripts/rack-preloader.rb💯in preload_app' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/helper-scripts/rack-preloader.rb:156:in module:App'
/usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/helper-scripts/rack-preloader.rb:30:in <module:PhusionPassenger>' /usr/local/rbenv/versions/2.3.3/lib/ruby/gems/2.3.0/gems/passenger-5.1.2/src/helper-scripts/rack-preloader.rb:29:in <main>'

###該当のソースコード
ruby言語、rails
ロカール環境からvagrant（仮想）に入るコマンドを打ちました。
ssh 192.168.33.10。その後、表示したいページが入っているファイルを
github から仮想の中にダウンロードしました。" git clone........"。表示したいページが入ってるファイルの中に入ります。→ "cd ......"。それでapacheを立ち上げました。sudo /apache/bin/apachectl startコマンドを打ちました。ブラウザーで"http://192.168.33.10/"と表示しようとした時、上記のエラー出ていました。

###試したこと
root権限で実行していないです。ユーザー（koko）権限で実行しています。bundle installも実行しました。

###補足情報(言語/FW/ツール等のバージョンなど)
より詳細な情報