Rails s エラーが出て困っています。

Question

前提・実現したいこと

railsの動作確認を行おうとしています。
$rails s を実行しようとすると下記の様に表示されて困っています。

どなたか教えて頂けませんでしょうか？
宜しくお願い致します。

発生している問題・エラーメッセージ

$bundle install

i$ bundle install
Fetching gem metadata from https://rubygems.org/..........
Fetching gem metadata from https://rubygems.org/.
Resolving dependencies...
Using rake 12.3.1
Using concurrent-ruby 1.0.5
Using i18n 1.0.1
Using minitest 5.11.3
Using thread_safe 0.3.6
Using tzinfo 1.2.5
Using activesupport 5.2.0
Using builder 3.2.3
Using erubi 1.7.1
Using mini_portile2 2.3.0
Fetching nokogiri 1.8.2
Installing nokogiri 1.8.2 with native extensions
Gem::Ext::BuildError: ERROR: Failed to build gem native extension.

current directory:
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/nokogiri-1.8.2/ext/nokogiri
/System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby -r
./siteconf20180522-28434-1sm7ntj.rb extconf.rb --use-system-librariescurrent
directory:
checking if the C compiler accepts ... yes
checking if the C compiler accepts
-Wno-error=unused-command-line-argument-hard-error-in-future... no
Building nokogiri using packaged libraries.
Using mini_portile version 2.3.0
checking for iconv.h... yes
checking for gzdopen() in -lz... yes
checking for iconv... yes
************************************************************************
IMPORTANT NOTICE:

Building Nokogiri with a packaged version of libxml2-2.9.7.

Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:

    gem install nokogiri -- --use-system-libraries
        [--with-xml2-config=/path/to/xml2-config]
        [--with-xslt-config=/path/to/xslt-config]

If you are using Bundler, tell it to use the option:

    bundle config build.nokogiri --use-system-libraries
    bundle install

Note, however, that nokogiri is not fully compatible with arbitrary
versions of libxml2 provided by OS/package vendors.
************************************************************************
Extracting libxml2-2.9.7.tar.gz into
tmp/x86_64-apple-darwin17/ports/libxml2/2.9.7... OK
Running 'configure' for libxml2 2.9.7... OK
Running 'compile' for libxml2 2.9.7... ERROR, review
'/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/nokogiri-1.8.2/ext/nokogiri/tmp/x86_64-apple-darwin17/ports/libxml2/2.9.7/compile.log'
to see what happened. Last lines are:
========================================================================
  CCLD     libxml2.la
  CC       testdso.lo
  CCLD     testdso.la
  CC       xmllint.o
  CCLD     xmllint
ld: warning: ignoring file /usr/local/Cellar/xz/5.2.3/lib/liblzma.dylib, file
was built for x86_64 which is not the architecture being linked (i386):
/usr/local/Cellar/xz/5.2.3/lib/liblzma.dylib
Undefined symbols for architecture i386:
  "_lzma_auto_decoder", referenced from:
      _xz_head in libxml2.a(xzlib.o)
  "_lzma_code", referenced from:
      _xz_decomp in libxml2.a(xzlib.o)
  "_lzma_end", referenced from:
      ___libxml2_xzclose in libxml2.a(xzlib.o)
  "_lzma_properties_decode", referenced from:
      _is_format_lzma in libxml2.a(xzlib.o)
ld: symbol(s) not found for architecture i386
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [xmllint] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
========================================================================
*** extconf.rb failed ***
Could not create Makefile due to some reason, probably lack of necessary
libraries and/or headers.  Check the mkmf.log file for more details.  You may
need configuration options.

Provided configuration options:
	--with-opt-dir
	--without-opt-dir
	--with-opt-include
	--without-opt-include=${opt-dir}/include
	--with-opt-lib
	--without-opt-lib=${opt-dir}/lib
	--with-make-prog
	--without-make-prog
	--srcdir=.
	--curdir
--ruby=/System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/$(RUBY_BASE_NAME)
	--help
	--clean
	--use-system-libraries
	--enable-static
	--disable-static
	--with-zlib-dir
	--without-zlib-dir
	--with-zlib-include
	--without-zlib-include=${zlib-dir}/include
	--with-zlib-lib
	--without-zlib-lib=${zlib-dir}/lib
	--enable-cross-build
	--disable-cross-build
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:402:in
`block in execute': Failed to complete compile task (RuntimeError)
from
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:373:in
`chdir'
from
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:373:in
`execute'
from
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:115:in
`compile'
from
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/mini_portile2-2.3.0/lib/mini_portile2/mini_portile.rb:154:in
`cook'
	from extconf.rb:365:in `block (2 levels) in process_recipe'
	from extconf.rb:257:in `block in chdir_for_build'
	from extconf.rb:256:in `chdir'
	from extconf.rb:256:in `chdir_for_build'
	from extconf.rb:364:in `block in process_recipe'
	from extconf.rb:262:in `tap'
	from extconf.rb:262:in `process_recipe'
	from extconf.rb:551:in `<main>'

To see why this extension failed to compile, please check the mkmf.log which can
be found here:

/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/extensions/universal-darwin-17/2.3.0/nokogiri-1.8.2/mkmf.log

extconf failed, exit code 1

Gem files will remain installed in
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/gems/nokogiri-1.8.2 for
inspection.
Results logged to
/Users/eri/MyVagrant/MyPro/vendor/bundle/ruby/2.3.0/extensions/universal-darwin-17/2.3.0/nokogiri-1.8.2/gem_make.out

An error occurred while installing nokogiri (1.8.2), and Bundler cannot
continue.
Make sure that `gem install nokogiri -v '1.8.2' --source
'https://rubygems.org/'` succeeds before bundling.

In Gemfile:
  rails was resolved to 5.2.0, which depends on
    actioncable was resolved to 5.2.0, which depends on
      actionpack was resolved to 5.2.0, which depends on
        actionview was resolved to 5.2.0, which depends on
          rails-dom-testing was resolved to 2.0.3, which depends on
            nokogiri

Gemfileの中身です。

# frozen_string_literal: true

source "https://rubygems.org"

git_source(:github) {|repo_name| "https://github.com/#{repo_name}" }

 gem "rails"
gem"rdefs"

gem 'therubyracer', platforms: :ruby

試したこと

$rails s -b 0.0.0.0
下記サイト様を参考
https://techacademy.jp/magazine/7197
https://qiita.com/Thort/items/f7204832ea7bc704d677
https://qiita.com/yuitnnn/items/b45bba658d86eabdbb26

補足情報（FW/ツールのバージョンなど）

os: Mac 10.13.4
ruby: 2.4.0p0
Rails: 5.2.0
sqlite3: 3.7.17
Bundler: 1.16.2
gem: 2.5.2

Answer 1

/home/vagrant/.rbenv/versions/2.4.0/lib/ruby/gems/2.4.0/gems/bundler-1.16.2/lib/bundler/runtime.rb:84:in `rescue in block (2 levels) in require': There was an error while trying to load the gem 'uglifier'. (Bundler::GemRequireError)

Gem Load Error is: Could not find a JavaScript runtime. See https://github.com/rails/execjs for a list of available runtimes.

上記のエラーメッセージから、bundle installした際に何かしらの失敗があると推測しました。
bundle install 実行時のログを追記できますでしょうか。

bundleログを受けての追記

以下の部分でインストールに失敗しています。

IMPORTANT NOTICE:

Building Nokogiri with a packaged version of libxml2-2.9.7.

Team Nokogiri will keep on doing their best to provide security
updates in a timely manner, but if this is a concern for you and want
to use the system library instead; abort this installation process and
reinstall nokogiri as follows:

    gem install nokogiri -- --use-system-libraries
        [--with-xml2-config=/path/to/xml2-config]
        [--with-xslt-config=/path/to/xslt-config]

If you are using Bundler, tell it to use the option:

    bundle config build.nokogiri --use-system-libraries
    bundle install

指示のとおり、以下を実行してみてください。

gem install nokogiri -- --use-system-libraries

bundle config build.nokogiri --use-system-libraries
bundle install

Comments

[退会済みユーザー]

回答ありがとうございます。
実行ログ記載しましたので、確認宜しくお願い致します。

[kazto]

回答更新しました。

[退会済みユーザー]

ローカル開発環境に入る前に、kaztoさんの指示通り実行してみました。

[退会済みユーザー]

bundle install 編集しましたので、宜しくお願いいたします。

[kazto]

なるほど、つまり「--use-system-libraries」をつけても何も変わらなかった、と。

調べてみましたが、Macではnokogiriのインストールはめんどくさいようです。
https://qiita.com/nipe0324/items/b12668806ab6be890208
いったん、上記URLを参考にインストールを進めてみていただけますでしょうか。

[退会済みユーザー]

13:56のコメントですが、 vagrant upする前とのことです。

説明が下手で申し訳ありません。

[退会済みユーザー]

はい！
ありがとうございました！